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Publications

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Papers: 77 Citations: 1 960 h-index: 22 i10-index: 34
2025
2 papers

Active Prostate Phantom with Multiple Chambers

Tian, Sizhe and Adagolodjo, Yinoussa and Dequidt, Jeremie

2025 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS)

2025
Conference
CORE: A Qualis: A1
CRediT ↗ · Supervision Methodology Funding acquisition Conceptualization Writing (review)

Prostate cancer is a major global health concern, requiring advancements in robotic surgery and diagnostics to improve patient outcomes. A phantom is a specially designed object that simulates human tissues or organs. It can be used for calibrating and testing a medical process, as well as for training and research purposes. Existing prostate phantoms fail to simulate dynamic scenarios. This paper presents a pneumatically actuated prostate phantom with multiple independently controlled chambers, allowing for precise volumetric adjustments to replicate asymmetric and symmetric benign prostatic hyperplasia (BPH). The phantom is designed based on shape analysis of magnetic resonance imaging (MRI) datasets, modeled with finite element method (FEM), and validated through 3D reconstruction.

Using Haptic Feedback in Digital Rectal Examination Training

Tian, Sizhe and Adagolodjo, Yinoussa and Dequidt, Jeremie
2025
Journal
CRediT ↗ · Supervision Methodology Funding acquisition Conceptualization Writing (review)

Prostate cancer is one of the most common cancer globally, particularly among men aged over 50. Digital rectal examination (DRE) is one of the first-line method for diagnosing and screening for the prostate cancer. However, medical students often lack sufficient training in performing DRE effectively. In this regard, we are developing a digital tool that seamlessly integrates digital simulation with haptic feedback to transform DRE training. Our method relies on the Finite Element Method (FEM) to create a detailed model of the probing-finger, organs, and their interactions. The contact forces generated by the probing-finger's movements in simulation, are then fed back to the user via a haptic device. We aim to accurately replicate mechanical properties associated with prostate in different conditions and provide realistic feedback, facilitating the preparation of medical professionals for DRE procedures. This approach has the potential to improve the effectiveness and accessibility of DRE training, ultimately contributing to better patient care and outcomes in prostate cancer diagnosis and management.

2023
6 papers

3D Kinematics and quasi-statics of a growing robot eversion

Przybylski, Flavie and Adagolodjo, Yinoussa and Dequidt,Jeremie and Berthet-Rayne, Pierre and Duriez, Christian

IEEE RoboSoft

2023
Conference
CRediT ↗ · Supervision Methodology Conceptualization Writing (review)

Growing robots and their eversion principle have wide applications ranging from surgery to industrial inspection and archaeology. The eversion process involves deploying an inflatable device with a material located at the tip of the robot, which, when under pressure, elongates the robot's body. However, the simulation of this complex kinematic phenomenon is a significant challenge. Our approach proposes to use a combination of kinematics and quasi-static modeling to parameterize the starting conditions of the eversion process. This facilitates the understanding of the behavior of this complex kinematic phenomenon and help identify factors that have a significant impact on the eversion process and its response to external factors. The kinematic model uses the Cosserat rod models for local coordinates, while the quasi-static model is based on finite element analysis. The two models are combined to capture the behavior of the robot tip during eversion. This approach has been implemented and tested using the SOFA framework and has been evaluated on the deployment of a vine robot on a narrow passage. The results of our approach are encouraging to better understand the behaviour of soft growing robot during eversion.

3D Kinematics and quasi-statics of a growing robot eversion

Przybylski, Flavie and Adagolodjo, Yinoussa and Dequidt,Jeremie and Berthet-Rayne, Pierre and Duriez, Christian

IEEE RoboSoft

2023
Conference
CRediT ↗ · Supervision Methodology Conceptualization Writing (review)

Growing robots and their eversion principle have wide applications ranging from surgery to industrial inspection and archaeology. The eversion process involves deploying an inflatable device with a material located at the tip of the robot, which, when under pressure, elongates the robot's body. However, the simulation of this complex kinematic phenomenon is a significant challenge. Our approach proposes to use a combination of kinematics and quasi-static modeling to parameterize the starting conditions of the eversion process. This facilitates the understanding of the behavior of this complex kinematic phenomenon and help identify factors that have a significant impact on the eversion process and its response to external factors. The kinematic model uses the Cosserat rod models for local coordinates, while the quasi-static model is based on finite element analysis. The two models are combined to capture the behavior of the robot tip during eversion. This approach has been implemented and tested using the SOFA framework and has been evaluated on the deployment of a vine robot on a narrow passage. The results of our approach are encouraging to better understand the behaviour of soft growing robot during eversion.

Augmented reality biomechanical simulations for pelvic conditions diagnoses

Courtecuisse, Hadrien and Dequidt, Jeremie

Biomechanics of the Female Reproductive System: Breast and Pelvic Organs

2023
Chapter
CRediT ↗ · Methodology Writing (orig.) Software Data Curation Validation Conceptualization

Digital tools are increasingly used for intraoperative assistance. Initially designed for training and learning, finite element simulations are now used and considered essential in the operating room and can be used to display through augmented reality (AR) the internal structures (vessels, tumors, etc.) on top of the intraoperative images. An essential advantage of biomechanical models lies in their ability to predict structures' behavior, providing a physics-based extrapolation, not just geometric, in areas where few or no intraoperative data are available. Yet, a significant difficulty for training simulations and biomechanical AR for medical purposes concerns the need for real-time computing without sacrificing accuracy.

Data-Driven Interactive Simulations for Clinical and Robotic Applications

Dequidt, Jeremie

University of Lille

2023
Thesis
CRediT ↗ · Conceptualization Methodology Software Writing - original draft

The research works briefly reviewed in this dissertation deal with questions related to the use of data in interactive simulations for applications in medicine and soft robotics. Geometrical modeling, (bio-)mechanical modeling as well as optimization techniques to reduce the computational footprint are presented. Using patient- specific or environment data with optimization techniques and simulation enables more realistic and predictive models and opens the way for new applications. Several examples are presented in the manuscript where our simulations were fed with data from medical images, videos streams or pre-operative data in order to provide more accurate medical simulations to provide better diagnoses or in the context of soft-robotics where visual servoing provides a more robust and stable control of soft-robots.

SoftRobots

Duriez, Christian and Coevoet, Eulalie and Marchal, Damien and Vanneste, Félix and Goury, Olivier and Dequidt, Jérémie

Inria, Université de Lille, CNRS

2023
Software
CRediT ↗ · Software Methodology Conceptualization Writing (review)

This plugin allows the modeling of deformable robots in the Sofa platform. It allows the modeling of different actuators, such as cable, pneumatic pressure, hydraulics and other simpler types of actuation. It also contains useful tools for animation design or communication with the robot. Coupled with the SoftRobots. Inverse plugin, it also allows the control of these robots. More information can be found on the dedicated website.

VisAdapt: Catadioptric Adaptive Camera for scenes of variable density of visual information

Ducrocq, Julien Jean and Caron, Guillaume and Midavaine, Hervé and Duriez, Christian and Dequidt, Jeremie and Mouaddib, El Mustapha

Applied optics, Vol. 62, No. 35, pp. 9207-9214

2023
Journal
IF: 0.515 SJR: Q2
CRediT ↗ · Methodology Conceptualization Validation Writing (review)

This paper presents the design method of a multi-resolution camera, named Visadapt. It is made of a conventional compact camera with a sensor and a lens pointed to a new deformable mirror so that the mirror in a flat state is parallel to the image plane. The main novelty of the latter mirror, to our knowledge, is the ability to control automatically strokes of several millimeters. This allows Visadapt to capture scenes with a spatially variable density of visual information. A grid of linear actuators, set underneath the mirror surface, deforms the mirror to reach the desired shape computed to capture several areas of different resolutions. Mechanical simulations are allowed to iterate on Visadapt's design, to reduce the geometrical distortions in the images. Evaluations made on an actual prototype of Visadapt show that, by adapting the mirror shape, this camera can magnify a scene object up to 20%, even off-centered in the field-of-view, while still perceiving the rest of the scene.

1
2022
2 papers

Automated Planning For Robotic Guidewire Navigation In TheCoronary Arteries

Schegg, Pierre and Dequidt, Jeremie and Coevoet, Eulalie andLeurent, Edouard and Sabatier, Remi and Preux, Philippe and Duriez, Christian

IEEE RoboSoft

2022
Conference
CRediT ↗ · Supervision Methodology Conceptualization Writing (review) Software

Soft continuum robots, and comparable instruments allow to perform some surgical procedures non-invasively. While safer, less morbid and more cost-effective, these medical interventions increase the complexity for the practitioners: the manipulation of anatomical structures is indirect through telescopic and flexible devices and the visual feedback is indirect through monitors. Interventional cardiology is an example of complex procedures where catheters and guidewires are manipulated to reach and treat remote areas of the vascular network. Such interventions may be assisted with a robot that will operate the tools but the planning (choice of tools and trajectories) remains a complex task. In this paper we use a simulation framework for flexible devices inside the vasculature and we propose a method to automatically control these devices to reach specific locations.

SofaGym: An open platform for Reinforcement Learning based onSoft Robot simulations

Schegg, Pierre and Menager, Etienne and Khairallah, Elie andMarchal, Damien and Dequidt, Jeremie and Preux, Philippe and Duriez, Christian

Soft Robotics Journal, Vol. TBA, No. TBA, pp. TBA

2022
Journal
IF: 7.784 SJR: Q1
CRediT ↗ · Methodology Writing (review) Supervision

OpenAI Gym is one of the standard interfaces used to train Reinforcement Learning (RL) Algorithms. The Simulation Open Framework Architecture (SOFA) is a physics-based engine that is used for soft robotics simulation and control based on real-time models of deformation. The aim of this article is to present SofaGym, an open-source software to create OpenAI Gym interfaces, called environments, out of soft robot digital twins. The link between soft robotics and RL offers new challenges for both fields: representation of the soft robot in an RL context, complex interactions with the environment, use of specific mechanical tools to control soft robots, transfer of policies learned in simulation to the real world, etc. The article presents the large possible uses of SofaGym to tackle these challenges by using RL and planning algorithms.

2019
4 papers

Calibration and External Force Sensing for Soft Robots using an RGB-D Camera

Zhang, Zhongkai and Petit, Antoine and Dequidt, Jeremie and Duriez, Christian

IEEE ICRA

2019
Conference
CORE: B Qualis: A1
CRediT ↗ · Supervision Methodology Writing (review) Data Curation Validation Conceptualization

Benefiting from the deformability of soft robots, calibration, and force sensing for soft robots are possible using an external vision-based system, instead of embedded mechatronic force sensors. In this letter, we first propose a calibration method to calibrate both the sensor-robot coordinate system and the actuator inputs. This task is addressed through a sequential optimization problem for both variables. We also introduce an external force sensing system based on a real-time finite element (FE) model with the assumption of static configurations, and which consists of two steps: force location detection and force intensity computation. The algorithm that estimates force location relies on the segmentation of the point cloud acquired by an RGB-D camera. Then, the force intensities can be computed by solving an inverse quasi-static problem based on matching the FE model with the point cloud of the soft robot. As for validation, the proposed strategies for calibration and force sensing have been tested using a parallel soft robot driven by four cables.

Calibration and External Force Sensing for Soft Robots using an RGB-D Camera

Zhang, Zhongkai and Petit, Antoine and Dequidt, Jeremie and Duriez, Christian

IEEE Robotics and Automation Letters, Vol. 4, No. 3, pp. 2356--2363

2019
Journal
IF: 3.741 SJR: Q1
CRediT ↗ · Supervision Methodology Writing (review) Data Curation Validation Conceptualization

Benefiting from the deformability of soft robots, calibration, and force sensing for soft robots are possible using an external vision-based system, instead of embedded mechatronic force sensors. In this letter, we first propose a calibration method to calibrate both the sensor-robot coordinate system and the actuator inputs. This task is addressed through a sequential optimization problem for both variables. We also introduce an external force sensing system based on a real-time finite element (FE) model with the assumption of static configurations, and which consists of two steps: force location detection and force intensity computation. The algorithm that estimates force location relies on the segmentation of the point cloud acquired by an RGB-D camera. Then, the force intensities can be computed by solving an inverse quasi-static problem based on matching the FE model with the point cloud of the soft robot. As for validation, the proposed strategies for calibration and force sensing have been tested using a parallel soft robot driven by four cables.

Motion Control of Cable-Driven Continuum Catheter Robot through Contacts

Zhang, Zhongkai and Dequidt, Jeremie and Back, Junghwan and Liu,Hongbin and Duriez, Christian

IEEE ICRA

2019
Conference
CORE: B Qualis: A1
CRediT ↗ · Supervision Methodology Writing (review) Data Curation Validation Conceptualization

Catheter-based intervention plays an important role in minimally invasive surgery. For the closed-loop control of catheter robot through contacts, the loss of contact sensing along the entire catheter might result in task failure. To deal with this problem, we propose a decoupled motion control strategy which allows to control insertion and bending independently. We model the catheter robot and the contacts using the Finite Element Method. Then, we combine the simulated system and the real system for the closed-loop motion control. The control inputs are computed by solving a quadratic programming (QP) problem with a linear complementarity problem. A simplified method is proposed to solve this optimization problem by converting it into a standard QP problem. Using the proposed strategy, not only the control inputs but also the contact forces along the entire catheter can be computed without using force sensors. Finally, we validate the proposed methods using both simulation and experiments on a cable-driven continuum catheter robot for the real-time motion control through contacts.

Motion Control of Cable-Driven Continuum Catheter Robot through Contacts

Zhang, Zhongkai and Dequidt, Jeremie and Back, Junghwan and Liu, Hongbin and Duriez, Christian

IEEE Robotics and Automation Letters, Vol. 4, No. 2, pp. 1852--1859

2019
Journal
IF: 3.741 SJR: Q1
CRediT ↗ · Supervision Methodology Writing (review) Data Curation Validation Conceptualization

Catheter-based intervention plays an important role in minimally invasive surgery. For the closed-loop control of catheter robot through contacts, the loss of contact sensing along the entire catheter might result in task failure. To deal with this problem, we propose a decoupled motion control strategy which allows to control insertion and bending independently. We model the catheter robot and the contacts using the Finite Element Method. Then, we combine the simulated system and the real system for the closed-loop motion control. The control inputs are computed by solving a quadratic programming (QP) problem with a linear complementarity problem. A simplified method is proposed to solve this optimization problem by converting it into a standard QP problem. Using the proposed strategy, not only the control inputs but also the contact forces along the entire catheter can be computed without using force sensors. Finally, we validate the proposed methods using both simulation and experiments on a cable-driven continuum catheter robot for the real-time motion control through contacts.

50
2018
3 papers

Virtual Image Correlation of Magnetic Resonance Images for 3D Geometric Modelling of Pelvic Organs

Jiang, Zhifan and Witz, Jean-Francois and Lecomte-Grosbras, Pauline and Dequidt, Jeremie and Cosson, Michel and Cotin, Stephane and Duriez, Christian and Brieu, Mathias

Strain, Vol. 55, No. 3, pp. 1230--5

2018
Journal
IF: 2.155
CRediT ↗ · Supervision Methodology conceptualization writing – review & editing Validation

Numerical simulation of pelvic system could lead to a better understanding of common pathology through objective and reliable analyses of pelvic mobility according to mechanical principles. In clinical context, patient‐specific simulation has the potential for a proper patient‐personalised cure. For this purpose, a simulable 3D geometrical model, well suited to patient anatomy, is required. However, the geometric modelling of pelvic system from medical images (MRI) is a complex operator‐dependent and time‐consuming process, not adapted to patient‐specific applications. This paper is addressing this challenging computational problem. The objective is to develop a technique, providing a smooth, consistent, and readily usable 3D geometrical model, seamlessly from image to simulation. In this paper, we use a generic topologically‐simplified B‐Spline model to represent pelvic organs. The presented paper develops a Virtual Image Correlation method to find the best correlation between the geometry and the image. The final reconstructed geometrical model is to be compatible with meshing and finite element simulation. Then, a variety of tests are performed to prove the concept, through both prototypical and pelvic models. Finally, since the pelvic system is complex, including structures hardly identifiable in MRI, some feasible solutions to introduce more complex pelvic models are also discussed.

Vision-based Sensing of External Force for Soft Robots using Finite Element Model

Zhang, Zhongkai and Dequidt, Jeremie and Duriez, Christian

IEEE Robotics and Automation Letters, Vol. 3, No. 3, pp. 1529--1536

2018
Journal
IF: 3.741 SJR: Q1
CRediT ↗ · Supervision Methodology Writing (review) Data Curation Validation Conceptualization

In this letter, we propose a new framework of external force sensing for soft robots based on the fusion of vision-based measurements and finite element model (FEM) techniques. A precise mechanical model of the robot is built using real-time FEM to describe the relationship between the external forces acting on the robot and the displacement of the predefined feature points. The position of these feature points on the real robot is measured using a vision system and is compared with the equivalent feature points in the finite element model. Using the compared displacement, the intensities of the external forces are computed by solving an inverse problem. Based on the developed FEM equations, we show that not only the intensities but also the locations of the external forces can be estimated. A strategy is proposed to find the correct locations of external forces among several possible ones. The method is verified and validated using both simulation and experiments on a soft sheet and a parallel soft robot (both of them have nontrivial shapes). The good results obtained from the experimental study demonstrate the capability of our approach.

Vision-based Sensing of External Force for Soft Robots using Finite Element Model

Zhang, Zhongkai and Dequidt, Jeremie and Duriez, Christian

IEEE ICRA

2018
Conference
CORE: B Qualis: A1
CRediT ↗ · Supervision Methodology Funding acquisition

In this letter, we propose a new framework of external force sensing for soft robots based on the fusion of vision-based measurements and finite element model (FEM) techniques. A precise mechanical model of the robot is built using real-time FEM to describe the relationship between the external forces acting on the robot and the displacement of the predefined feature points. The position of these feature points on the real robot is measured using a vision system and is compared with the equivalent feature points in the finite element model. Using the compared displacement, the intensities of the external forces are computed by solving an inverse problem. Based on the developed FEM equations, we show that not only the intensities but also the locations of the external forces can be estimated. A strategy is proposed to find the correct locations of external forces among several possible ones. The method is verified and validated using both simulation and experiments on a soft sheet and a parallel soft robot (both of them have nontrivial shapes). The good results obtained from the experimental study demonstrate the capability of our approach.

2017
5 papers

Blood vessel modeling for interactive simulation of interventional neuroradiology procedures

Kerrien, Erwan and Yureidini, Ahmed and Dequidt, Jeremie and Duriez, Christian and Anxionnat, Rene and Cotin, Stephane

Medical image analysis, Vol. 35, pp. 685--698

2017
Journal
IF: 6.691 SJR: Q1
CRediT ↗ · Supervision Methodology Funding acquisition

Endovascular interventions can benefit from interactive simulation in their training phase but also during pre-operative and intra-operative phases if simulation scenarios are based on patient data. A key feature in this context is the ability to extract, from patient images, models of blood vessels that impede neither the realism nor the performance of simulation. This paper addresses both the segmentation and reconstruction of the vasculature from 3D Rotational Angiography data, and adapted to simulation: An original tracking algorithm is proposed to segment the vessel tree while filtering points extracted at the vessel surface in the vicinity of each point on the centerline; then an automatic procedure is described to reconstruct each local unstructured point set as a skeleton-based implicit surface (blobby model).

Modeling interactions with soft objects

Dequidt, Jeremie

IROS WS

2017
Conference
CRediT ↗ · Conceptualization Methodology Software Writing (orig.) Writing (review) Validation

Multi-organ Motion Tracking in Dynamic Magnetic Resonance Imaging for Evaluation of Pelvic System Mobility and Shear Strain

Jiang, Zhifan and Witz, Jean-Francois and Lecomte-Grosbras, Pauline and Dequidt, Jeremie and Cosson, Michel and Cotin, Stephane and Duriez, Christian and Brieu, Mathias

Strain, Vol. 53, No. 2

2017
Journal
IF: 1.605
CRediT ↗ · Supervision Methodology Funding acquisition

Female pelvic disorders have a large social impact; the diagnosis of which relies on a key indication: pelvic mobility. The normal mobility is present in a healthy patient, meanwhile the hypermobility can be a sign of female pelvic prolapse and the hypomobility for endometriosis. The evaluation of pelvic mobility is based on medical image analysis. However, the latter does not provide precise values of these indicators directly. Moreover, suspension devices play an important role in pelvic organ function but can hardly be observed on medical images. Our objective is to propose an image‐based analysis tool for the quantitative evaluation of pelvic mobility and the shear strain which has an impact on suspension devices.

Software toolkit for modeling, simulation, and control of soft robots

Coevoet, Eulalie and Morales-Bieze, Thor and Largilliere, Frederick and Zhang, Zhongkai and Thieffry, Maxime and Sanz-Lopez, Mario and Carrez, Bruno and Marchal, Damien and Goury, Olivier and Dequidt, Jeremie and Duriez, Christian

Advanced Robotics, Vol. 31, No. 22, pp. 1208-1224

2017
Journal
IF: 1.433 SJR: Q2 CORE: B
CRediT ↗ · Supervision Methodology Software Validation Conceptualization

The technological differences between traditional robotics and soft robotics have an impact on all of the modeling tools generally in use, including direct kinematics and inverse models, Jacobians, and dynamics. Due to the lack of precise modeling and control methods for soft robots, the promising concepts of using such design for complex applications (medicine, assistance, domestic robotics, etc.) cannot be practically implemented. This paper presents a first unified software framework dedicated to modeling, simulation, and control of soft robots. The framework relies on continuum mechanics for modeling the robotic parts and boundary conditions like actuators and contacts using a unified representation based on Lagrange multipliers. It enables the digital robot to be simulated in its environment using a direct model.

224

Visual Servoing Control of Soft Robots Based on Finite Element Model

Zhang, Zhongkai and Morales Bieze, Thor Enrique and Dequidt, Jeremie and Kruszewski, Alexandre and Duriez, Christian

IEEE/RSJ IROS

2017
Conference
CORE: A Qualis: A1
CRediT ↗ · Supervision Methodology Funding acquisition Writing (review) Validation

In this paper, we propose a strategy for the control of soft robots with visual tracking and simulation-based predictor. A kinematic model of soft robots is obtained thanks to the Finite Element Method (FEM) computed in real-time. The FEM allows to obtain a prediction of the Jacobian matrix of the robot. This allows a first control of the robot, in the actuator space. Then, a second control strategy based on the feedback of infrared cameras is developed to obtain a correction of the effector position. The robust stability of this closed-loop system is obtained based on Lyapunov stability theory. Otherwise, to deal with the problem of image features (the marker points placed on the end effector of soft robot) loss, a switched control strategy is proposed to combine both the open-loop controller and the closed-loop controller.

2016
3 papers

Framework for online simulation of soft robots with optimization-based inverse model

Duriez, Christian and Coevoet, Eulalie and Largilliere, Frederick and Morales-Bieze, T and Zhang, Zhongkai and Sanz-Lopez, Mario and Carrez, B and Marchal, Damien and Goury, Olivier and Dequidt, Jeremie

SIMPAR

2016
Conference
CRediT ↗ · Supervision Methodology Funding acquisition

Kinematic Modeling and Observer Based Control of Soft Robot using Real-Time Finite Element Method

Zhang, Zhongkai and Dequidt, Jeremie and Kruszewski, Alexandre and Largilliere, Frederick and Duriez, Christian

IEEE/RSJ IROS

2016
Conference
CORE: A Qualis: A1
CRediT ↗ · Supervision Methodology Funding acquisition

This paper aims at providing a novel approach to modeling and controlling soft robots. Based on real-time Finite Element Method (FEM), we obtain a globally defined discrete-time kinematic model in the workspace of soft robots. From the kinematic equations, we deduce the soft-robot Jacobian matrix and discuss the conditions to avoid singular configurations. Then, we propose a novel observer based control methodology where the observer is built by Finite Element Model in this paper to deal with the control problem of soft robots. A closed-loop controller for position control of soft robot is designed based on the discrete-time model with feedback signal being extracted by means of visual servoing. Finally, experimental results on a parallel soft robot show the efficiency and performance of our proposed controller.

Numerical Simulation of Cochlear-Implant Surgery: Towards Patient-Specific Planning

Goury, Olivier and Nguyen, Yann and Torres, Renato and Dequidt, Jeremie and Duriez, Christian

MICCAI

2016
Conference
CORE: A Qualis: A1
CRediT ↗ · Supervision Methodology Funding acquisition

During Cochlear Implant Surgery, the right placement of the implant and the minimization of the surgical trauma to the inner ear are an important issue with recurrent fails. In this study, we reproduced, using simulation, the mechanical insertion of the implant during the surgery. This simulation allows to have a better understanding of the failing cases: excessive contact force, buckling of the implant inside and outside the cochlea. Moreover, using a patient-specific geometric model of the cochlea in the simulation, we show that the insertion angle is a clinical parameter that has an influence on the forces endured by both the cochlea walls and the basilar membrane, and hence to post-operative trauma. The paper presents the mechanical models used for the implant, for the basilar membrane and the boundary conditions (contact, friction, insertion etc...) and discuss the obtained results in the perspective of using the …

2015
9 papers

B-spline Based Multi-organ Detection in Magnetic Resonance Imaging

Jiang, Zhifan and Witz, Jean-Francois and Lecomte-Grosbras, Pauline and Dequidt, Jeremie and Duriez, Christian and Cosson, Michel and Cotin, Stephane and Brieu, Mathias

Strain, Vol. 51, No. 3, pp. 235--247

2015
Journal
IF: 1.29
CRediT ↗ · Supervision Methodology Funding acquisition

n the context of the female pelvic medicine, non‐invasive magnetic resonance imaging is widely used for the diagnosis of pelvic floor disorders. Nowadays, in the clinical routine, diagnoses rely largely on human interpretation of medical images, on the experience of physicians, with sometimes subjective interpretations. Hence, image correlation methods would be an alternative way to assist physicians to provide more objective analyses with standard procedures and parametrisation for patient‐specific cases. Moreover, the main symptoms of pelvic system pathologies are abnormal mobilities. The finite element model simulation is a powerful tool for understanding such mobilities. Both the patient‐specific simulation and the image analysis require accurate and smooth geometries of the pelvic organs. This paper introduces a new method that can be classified as a model‐to‐image correlation approach.

20

Détection de contours des organes pelviens dans des images médicales par modèles de B-spline

Jiang, Zhifan and Dequidt, Jeremie and Cotin, Stephane

CFM

2015
Conference
CRediT ↗ · Supervision Methodology Funding acquisition

Fracture in Augmented Reality

Haouchine, Nazim and Bilger, Alexandre and Dequidt, Jeremie and Cotin, Stephane

ACM SIGGRAPH

2015
Conference
CRediT ↗ · Supervision Methodology Funding acquisition

Impact of Soft Tissue Heterogeneity on Augmented Reality for Liver Surgery

Haouchine, Nazim and Cotin, Stephane and Peterlik, Igor and Dequidt, Jeremie and Sanz Lopez, Mario and Kerrien, Erwan and Berger, Marie-Odile

IEEE Transactions on Visualization and Computer Graphics, Vol. 21, No. 5, pp. 584-597

2015
Journal
IF: 2.17 SJR: Q1 CORE: A
CRediT ↗ · Supervision Methodology Funding acquisition
62

Monocular 3D Reconstruction and Augmentation of Elastic Surfaces with Self-Occlusion Handling

Haouchine, Nazim and Dequidt, Jeremie and Berger, Marie-Odile and Cotin, Stephane

IEEE Transactions on Visualization and Computer Graphics, Vol. 21, No. 12, pp. 1363-1376

2015
Journal
IF: 3.148 SJR: Q1 CORE: A
CRediT ↗ · Supervision Methodology Funding acquisition

Real-time control of soft-robots using asynchronous finite element modeling

Largilliere, Frederick and Verona, Valerian and Coevoet, Eulalie and Sanz-Lopez, Mario and Dequidt, Jeremie and Duriez, Christian

IEEE ICRA

2015
Conference
CORE: B Qualis: A1
CRediT ↗ · Supervision Methodology Funding acquisition

Registration by interactive inverse simulation: application for adaptive radiotherapy

Coevoet, Eulalie and Reynaert, Nick and Lartigau, Eric and Schiappacasse, Luis and Dequidt, Jeremie and Duriez, Christian

International Journal of Computer Assisted Radiology and Surgery, Vol. 10, No. 8, pp. 1193--1200

2015
Journal
IF: 1.995 SJR: Q2
CRediT ↗ · Supervision Methodology Funding acquisition

This paper introduces a new methodology for semi-automatic registration of anatomical structure deformations. The contribution is to use an interactive inverse simulation of physics-based deformable model, computed in real time.

7

Surgery Training, Planning and Guidance Using the SOFA Framework

Talbot, Hugo and Haouchine, Nazim and Peterlik, Igor and Dequidt, Jeremie and Duriez, Christian and Delingette, Herve and Cotin, Stéphane

EG

2015
Conference
CRediT ↗ · Supervision Methodology Funding acquisition
19

Vascular neurosurgery simulation with bimanual haptic feedback

Dequidt, Jeremie and Coevoet, Eulalie and Thines, Laurent and Duriez, Christian

VRIPHYS

2015
Conference
CRediT ↗ · Conceptualization Methodology Software Writing (orig.) Writing (review)

Virtual surgical simulators face many computational challenges: they need to provide biophysical accuracy, realistic feed-backs and high-rate responses. Better biophysical accuracy and more realistic feed-backs (be they visual, haptic.. .) induce more computational footprint. State-of-the-art approaches use high-performance hardware or find an acceptable trade-off between performance and accuracy to deliver interactive yet pedagogically relevant simulators. In this paper, we propose an interactive vascular neurosurgery simulator that provides bi-manual interaction with haptic feedback. The simulator is an original combination of states-of-the-art techniques that allows visual realism, bio-physical realism, complex interactions with the anatomical structures and the instruments and haptic feedback. Training exercises are also proposed to learn and to perform the different steps of intracranial aneurysm surgery (IAS). We assess the performance of our simulator with quantitative performance benchmarks and qualitative assessments of junior and senior clinicians.

8
2014
7 papers

Introducing interactive inverse FEM simulation and its application for adaptive radiotherapy

Coevoet, Eulalie and Reynaert, Nick and Lartigau, Eric and Schiappacasse, Luis and Dequidt, Jeremie and Duriez, Christian

MICCAI

2014
Conference
CORE: A Qualis: A1
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization

Réalité augmentée pour la chirurgie minimalement invasive du foie utilisant un modèle biomécanique guidé par l'image

Haouchine, Nazim and Cotin, Stephane and Dequidt, Jeremie and Kerrien, Erwan and Berger and Marie-Odile

RFIA

2014
Conference
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization

Segmentation, Geometric Modeling And Motion Tracking For Evaluation Of Pelvic System Mobilities

Jiang, Zhifan and Witz Jean-Francois and Lecomte-Grosbras Pauline and Dequidt, Jeremie and Cotin, Stephane and Duriez, Christian and Brieu, Mathias

ICEM

2014
Conference
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization

A ce jour, en routine clinique, grâce aux technologies avancées d'imagerie par résonance magnétique (IRM), le diagnostic des troubles du système pelvien chez la femme dépend de l'analyse d'images IRM par les médecins avec un risque de subjectivités. La simulation éléments finis est un outil prometteur pour l'aide à la compréhension qui, entre autre basée sur l'IRM, peut réduire la subjectivité des analyses. Pour cela, nous introduisons une méthode permettant d'identifier semi-automatiquement les organes pelviens observables sur des images IRM. Ce travail permet de mettre en place des mesures objectives et quantitatives, qui aide à la modélisation géométrique du système pelvien et à l'analyse des mobilités pour les études plus approfondies. Un modèle paramétré de B-spline est utilisé comme descriptif de géométries dédiées. Ce modèle initial est recalé sur l'organe présenté dans l'image réelle par corrélation d'images virtuelles. Nous avons validé la détection (de la vessie, du vagin et du rectum) sur un jeu de données de 19 patientes, présentant des mobilités physiologiques ou pathologiques.

Single View Augmentation of 3D Elastic Objects

Haouchine, Nazim and Dequidt, Jeremie and Berger, Marie-Odile and Cotin, Stephane

IEEE ISMAR

2014
Conference
CORE: A* Qualis: A2
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization
43

Testbed for Assessing the Accuracy of Interventional Radiology Simulations

Sanz-Lopez, Mario and Dequidt, Jeremie and Kerrien, Erwan and Duriez, Christian and Berger, Marie-Odile and Cotin, Stephane

ISBMS

2014
Conference
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization
3

The Role of Ligaments: Patient-Specific or Scenario-Specific?

Bosman, Julien and Haouchine, Nazim and Dequidt, Jeremie and Peterlik, Igor and Cotin, Stephane and Duriez, Christian

ISBMS

2014
Conference
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization
9

Towards an accurate tracking of liver tumors for augmented reality in robotic assisted surgery

Haouchine, Nazim and Dequidt, Jeremie and Peterlik, Igor and Kerrien, Erwan and Berger, Marie-Odile and Cotin, Stephane

IEEE ICRA

2014
Conference
CORE: B Qualis: A1
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization
24
2013
6 papers

Computer-based training system for cataract surgery

Dequidt, Jeremie and Courtecuisse, Hadrien and Comas, Olivier and Allard, Jeremie and Duriez, Christian and Cotin, Stephane and Dumortier, Elodie and Wavreille, Olivier and Rouland, Jean-Francois

Simulation: Transactions of the Society for Modeling and Simulation International, Vol. 16, pp. 1--15

2013
Journal
IF: 1.465 SJR: Q2
CRediT ↗ · Conceptualization Methodology Software Writing (orig.) Writing (review) Formal Analysis Investigation Visualization
11

Deformation-based Augmented Reality for Hepatic Surgery

Haouchine, Nazim and Dequidt, Jeremie and Berger, Marie-Odile and Cotin, Stephane

MMVR

2013
Conference
CORE: B Qualis: B4
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization
39

Haptic Rendering of Interacting Dynamic Deformable Objects Simulated in Real-Time at Different Frequencies

Dervaux, Francois and Peterlik, Igor and Dequidt, Jeremie and Cotin, Jeremie and Duriez Christian

IEEE/RSJ IROS

2013
Conference
CORE: A Qualis: A1
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization
10

Image-guided Simulation of Heterogeneous Tissue Deformation For Augmented Reality during Hepatic Surgery

Haouchine, Nazim and Dequidt, Jeremie and Peterlik, Igor and Kerrien, Erwan and Berger, Marie-Odile and Cotin, Stephane

IEEE ISMAR

2013
Conference
CORE: A* Qualis: A2
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization
154

Towards a better understanding of pelvic system disorders using numerical simulation

Lecomte-Grosbras, Pauline and Nassirou - Diallo, Mouhamadou and Witz, Jean-Francois and Marchal, Damien and Dequidt, Jeremie and Cotin, Stephane and Cosson, Michel and Duriez, Christian and Brieu, Mathias

MICCAI

2013
Conference
CORE: A Qualis: A1
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization

VRIPHYS 13: 10th Workshop on Virtual Reality Interactions and PhysicalSimulations, Lille, France, 2013. Proceedings

2013
Conference
CRediT ↗ · Writing (orig.) Formal Analysis Investigation Visualization
2012
5 papers

A (Near) Real-Time Simulation Method of Aneurysm Coil Embolization

Wei, Yiyi and Cotin, Stephane and Dequidt, Jeremie and Duriez, Christian and Allard, Jeremie and Kerrien, Erwan

Aneurysm

2012
Chapter
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization

A Sketch-Based Interface for Annotation of 3D Brain Vascular Reconstructions

Selosse, David and Dequidt, Jeremie and Grisoni, Laurent

CGI

2012
Conference
CORE: B Qualis: B1
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization

A Sketch-Based Interface for Annotation of 3D Brain Vascular Reconstructions

Selosse, David and Dequidt, Jeremie and Grisoni, Laurent
2012
Technical Report
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization

Local Implicit Modeling of Blood Vessels for Interactive Simulation

Yureidini, Ahmed and Kerrien, Erwan and Dequidt, Jeremie and Duriez, Christian and Cotin, Stephane

MICCAI

2012
Conference
CORE: A Qualis: A1
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization
9

Physics-based Augmented Reality for 3D Deformable Object

Haouchine, Nazim and Dequidt, Jeremie and Kerrien, Erwan and Berger, Marie-Odile and Cotin, Stephane

VRIPHYS

2012
Conference
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization
2011
5 papers

A Prototype of Simulation System for Cataract Surgery Training

Dumortier, Elodie and Cotin, Stephane and Dequidt, Jeremie and Rouland, Jean-Francois

ESCR

2011
Conference
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization

Assessment Metrics For A Prototype Of Simulation System For Cataract Surgery Training

Dumortier, Elodie and Cotin, Stephane and Dequidt, Jeremie and Rouland, Jean-Francois

ARVO

2011
Conference
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization

Biomechanical simulation of electrode migration for deep brain stimulation

Bilger, Alexandre and Dequidt, Jeremie and Duriez, Christian and Cotin, Stephane

MICCAI

2011
Conference
CORE: A Qualis: A1
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization
19

Computer-based simulation for the endovascular treatment of intracranial aneurysms

Yureidini, Ahmed and Dequidt, Jeremie and Kerrien, Erwan and Duriez, Christian and Cotin, Stephane

LIVIM

2011
Conference
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization

Realisation d'un Prototype de Simulateur Fonctionnel pour la Chirurgie de la Cataracte

Dumortier, Elodie and Cotin, Stephane and Dequidt, Jeremie and Rouland, Jean-Francois

SFO

2011
Conference
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization
2010
2 papers

Computer-Based Simulation of Cataract Surgery: Toward a New Teaching Paradigm

Boubchir, Nadia and Cotin, Stephane and Comas, Olivier and Roy, Frederick and Duriez, Christian and Dequidt, Jeremie and Allard, Jeremie and Rouland, Jean-Francois

ARVO

2010
Conference
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization

Computer-Based Training System for Cataract Surgery

Dumortier, Elodie and Cotin, Stephane and Dequidt, Jeremie and Duriez, Christian and Allard, Jeremie and Rouland, Jean-Francois

ICST

2010
Conference
CRediT ↗ · Supervision Methodology Funding acquisition Writing (orig.) Formal Analysis Investigation Visualization
2009
3 papers

Computer-Based Simulation of IOL Injection: Toward a Full Featured Cataract Surgery Training System

Boubchir, Nadia and Cotin, Stephane and Duriez, Christian and Dequidt, Jeremie and Allard, Jeremie and Rouland, Jean-Francois

ARVO

2009
Conference
CRediT ↗ · Methodology Software Writing (orig.) Formal Analysis Investigation Visualization

Evaluation of a computer-based simulation for the endovascular treatment of intracranial aneurysms

Anxionnat, René and Rocca, Federico and Bracard, Serge and Dequidt, Jeremie and Kerien, Erwan and Duriez, Christian and Berger, Marie-Odile and Cotin, Stephane

WFITN

2009
Conference
CRediT ↗ · Methodology Software Writing (orig.) Formal Analysis Investigation Visualization

Towards interactive planning of coil embolization in brain aneurysms

Dequidt, Jeremie and Duriez, Christian and Cotin, Stephane and Kerrien, Erwan

MICCAI

2009
Conference
CORE: A Qualis: A1
CRediT ↗ · Conceptualization Methodology Software Writing (orig.) Writing (review) Formal Analysis Investigation Visualization
2008
2 papers

Interactive simulation of embolization coils: Modeling and experimental validation

Dequidt, Jeremie and Marchal, Maud and Duriez, Christian and Kerien, Erwan and Cotin, Stephane

MICCAI

2008
Conference
CORE: A Qualis: A1
CRediT ↗ · Conceptualization Methodology Software Writing (orig.) Writing (review) Formal Analysis Investigation Visualization
54

Refining the 3D surface of blood vessels from a reduced set of 2D DSA images

Kerrien, Erwan and Berger, Marie-Odile and Dequidt, Jeremie

AMICS

2008
Conference
CRediT ↗ · Methodology Software Writing (orig.) Formal Analysis Investigation Visualization
2007
2 papers

EVE: Computer Based Endovascular Training System for Neuroradiolgy

Rabinov, James and Cotin, Stephane and Allard, Jeremie and Dequidt, Jeremie and Lenoir, Julien and Luboz, Vincent and Neumann, Paul and Wu, Xunlei and Dawson, Steve

NER

2007
Conference
CRediT ↗ · Methodology Software Writing (orig.) Formal Analysis Investigation Visualization

Interactive contacts resolution using smooth surface representation

Dequidt, Jeremie and Lenoir, Julien and Cotin, Stephane

MICCAI

2007
Conference
CORE: A Qualis: A1
CRediT ↗ · Conceptualization Methodology Software Writing (orig.) Writing (review) Formal Analysis Investigation Visualization
2006
1 paper

Towards Cuttable Deformable Objects

Marchal, Damien and Aubert, Fabrice and Chaillou, Christophe and Grisoni, Laurent and Dequidt, Jeremie

ICT VR

2006
Conference
CRediT ↗ · Methodology Software Writing (orig.) Formal Analysis Investigation Visualization
2005
6 papers

Asynchronous Interactive Physical Simulation

Grisoni, Laurent and Dequidt, Jeremie

ICT VR

2005
Conference
CRediT ↗ · Methodology Software Writing (orig.) Formal Analysis Investigation Visualization

Collaborative Development of an Open Framework for Medical Simulation

Cotin, Stephane and Neumann, Paul and Wu, Xunlei and Fonteneau, Sylvere and Bensoussan, Pierre-Jean and Marchal, Damien and Dequidt, Jeremie and Grisoni, Laurent and Karpf, Sylvain

Insight

2005
Conference
CRediT ↗ · Methodology Software Writing (orig.) Formal Analysis Investigation Visualization

Collaborative interactive physical simulation

Dequidt, Jeremie and Grisoni, Laurent and Chaillou, Christophe

Graphite

2005
Conference
CORE: B
CRediT ↗ · Conceptualization Methodology Software Writing (orig.) Writing (review) Formal Analysis Investigation Visualization

Objets autonomes en simulation physique temps-réel

Dequidt, Jeremie

University of Lille 1

2005
Thesis
CRediT ↗ · Conceptualization Methodology Software Writing (orig.) Formal Analysis Investigation Visualization

Time-Critical Animation of Deformable Solids

Dequidt, Jeremie and Grisoni, Laurent and Chaillou, Christophe

CASA

2005
Conference
CRediT ↗ · Conceptualization Methodology Software Writing (orig.) Writing (review) Formal Analysis Investigation Visualization

Time-Critical Animation of Deformable Solids

Dequidt, Jeremie and Marchal, Damien and Grisoni, Laurent

Computer Animation and Virtual Worlds, Vol. 16, pp. 177--187

2005
Journal
IF: 1.091 CORE: B
CRediT ↗ · Conceptualization Methodology Software Writing (orig.) Writing (review) Formal Analysis Investigation Visualization
23
2004
3 papers

Asynchronous Interactive Physical Simulation

Dequidt, Jeremie and Grisoni, Laurent and Chaillou, Christophe
2004
Technical Report
CRediT ↗ · Conceptualization Methodology Software Writing (orig.) Writing (review) Formal Analysis Investigation Visualization
7

Détection de collisions entre objets rigides convexes autonomes

Dequidt, Jeremie and Grisoni, Laurent and Meseure, Philippe

Revue de CFAO et d'informatique graphique, Vol. 18, No. 2, pp. 183--195

2004
Journal
CRediT ↗ · Conceptualization Methodology Software Writing (orig.) Writing (review) Formal Analysis Investigation Visualization

Virtual Reality Applications and Frame-Rate Control

Grisoni, Laurent and Dequidt, Jeremie and Chaillou, Christophe

DAS

2004
Conference
CRediT ↗ · Methodology Software Writing (orig.) Formal Analysis Investigation Visualization
2002
1 paper

Détection de collisions entre objets physiques autonomes

Dequidt, Jeremie

University of Lille 1

2002
Thesis
CRediT ↗ · Conceptualization Methodology Software Writing (orig.) Formal Analysis Investigation Visualization